STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161393Cadherin 4, type 1, R-cadherin (retinal); Cadherins are calcium-dependent cell adhesion proteins. (913 aa)    
Predicted Functional Partners:
CDH4
Cadherin 4; Cadherins are calcium-dependent cell adhesion proteins.
  
  
 
0.901
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.879
ctnna2
Catenin (cadherin-associated protein), alpha 2.
    
 0.843
LOC101173369
Junction plakoglobin a.
   
 0.835
LOC101171502
Uncharacterized protein.
   
 0.802
ctnna1
Catenin (cadherin-associated protein), alpha 1.
    
 0.763
LOC101161503
Uncharacterized protein.
    
 0.763
LOC101170569
Uncharacterized protein.
    
 0.755
ctnnd1
Uncharacterized protein.
    
 0.755
cdh16
Cadherin 16, KSP-cadherin.
   
 
0.713
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.