STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cacul1CDK2 associated cullin domain 1; Belongs to the cullin family. (329 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.987
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.933
fbxw11
F-box and WD repeat domain containing 11a.
   
 0.918
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
    
 0.877
kdm2a
Lysine (K)-specific demethylase 2Ab.
    
 0.862
LOC101163098
Lysine (K)-specific demethylase 2Bb.
    
 0.862
LOC101171056
Lysine (K)-specific demethylase 2Aa.
    
 0.862
LOC101161646
Lysine (K)-specific demethylase 2Ba.
    
 0.862
LOC101161462
Uncharacterized protein.
    
 0.862
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.856
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.