STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pkd2l1EF-hand domain-containing protein. (935 aa)    
Predicted Functional Partners:
pkd1
Uncharacterized protein.
    
0.945
pkd1l2
Polycystic kidney disease 1 like 2a.
    
 
0.802
exoc5
Exocyst complex component 5.
     
 0.743
tas1r2
G_PROTEIN_RECEP_F3_4 domain-containing protein.
      
 0.613
trpm5
Transient receptor potential cation channel, subfamily M, member 5.
   
  
 0.609
LOC101174726
Protein phosphatase, Mg2+/Mn2+ dependent, 1K.
      
 0.602
exoc4
Exocyst complex component 4.
     
 0.590
exoc8
Exocyst complex component 8.
     
 0.568
exoc1
Exocyst complex component 1.
     
 0.568
LOC101171857
Component of inhibitor of nuclear factor kappa B kinase complex.
      
 0.559
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.