STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpsf4Cleavage and polyadenylation specific factor 4. (266 aa)    
Predicted Functional Partners:
WDR33
WD repeat domain 33.
   
 0.999
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.999
sympk
Symplekin.
   
 0.999
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.999
LOC101159890
FIP1 like 1b (S. cerevisiae).
    
 0.999
cpsf3
Cleavage and polyadenylation specific factor 3.
   
 0.998
papolg
Poly(A) polymerase gamma.
    
 0.996
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.984
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
   
 0.981
wdr82
WD repeat domain 82.
   
 0.962
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.