lin9 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lin9

Lin-9 DREAM MuvB core complex component. (547 aa)

Predicted Functional Partners:

lin54

0.999

lin52

0.999

lin37

0.998

rbbp4

0.995

LOC101156710

0.995

mybl2

0.992

wdr73

0.948

rbl1

0.941

rb1

0.941

LOC101172332

0.929

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156710	LOC101172332	ENSORLP00000021495	ENSORLP00000004335	Retinoblastoma binding protein 4, like.	Uncharacterized protein.	0.674
LOC101156710	lin37	ENSORLP00000021495	ENSORLP00000040868	Retinoblastoma binding protein 4, like.	Lin-37 DREAM MuvB core complex component.	0.995
LOC101156710	lin52	ENSORLP00000021495	ENSORLP00000042392	Retinoblastoma binding protein 4, like.	Lin-52 DREAM MuvB core complex component.	0.989
LOC101156710	lin54	ENSORLP00000021495	ENSORLP00000031994	Retinoblastoma binding protein 4, like.	Lin-54 DREAM MuvB core complex component.	0.992
LOC101156710	lin9	ENSORLP00000021495	ENSORLP00000017237	Retinoblastoma binding protein 4, like.	Lin-9 DREAM MuvB core complex component.	0.995
LOC101156710	mybl2	ENSORLP00000021495	ENSORLP00000014540	Retinoblastoma binding protein 4, like.	V-myb avian myeloblastosis viral oncogene homolog-like 2b.	0.966
LOC101156710	rb1	ENSORLP00000021495	ENSORLP00000036779	Retinoblastoma binding protein 4, like.	Retinoblastoma 1.	0.860
LOC101156710	rbbp4	ENSORLP00000021495	ENSORLP00000021493	Retinoblastoma binding protein 4, like.	Retinoblastoma binding protein 4.	0.900
LOC101156710	rbl1	ENSORLP00000021495	ENSORLP00000023818	Retinoblastoma binding protein 4, like.	Retinoblastoma-like 1 (p107).	0.905
LOC101172332	LOC101156710	ENSORLP00000004335	ENSORLP00000021495	Uncharacterized protein.	Retinoblastoma binding protein 4, like.	0.674
LOC101172332	lin37	ENSORLP00000004335	ENSORLP00000040868	Uncharacterized protein.	Lin-37 DREAM MuvB core complex component.	0.831
LOC101172332	lin52	ENSORLP00000004335	ENSORLP00000042392	Uncharacterized protein.	Lin-52 DREAM MuvB core complex component.	0.898
LOC101172332	lin54	ENSORLP00000004335	ENSORLP00000031994	Uncharacterized protein.	Lin-54 DREAM MuvB core complex component.	0.757
LOC101172332	lin9	ENSORLP00000004335	ENSORLP00000017237	Uncharacterized protein.	Lin-9 DREAM MuvB core complex component.	0.929
LOC101172332	rb1	ENSORLP00000004335	ENSORLP00000036779	Uncharacterized protein.	Retinoblastoma 1.	0.461
LOC101172332	rbbp4	ENSORLP00000004335	ENSORLP00000021493	Uncharacterized protein.	Retinoblastoma binding protein 4.	0.674
LOC101172332	rbl1	ENSORLP00000004335	ENSORLP00000023818	Uncharacterized protein.	Retinoblastoma-like 1 (p107).	0.539
LOC101172332	wdr73	ENSORLP00000004335	ENSORLP00000019304	Uncharacterized protein.	Uncharacterized protein.	0.529
lin37	LOC101156710	ENSORLP00000040868	ENSORLP00000021495	Lin-37 DREAM MuvB core complex component.	Retinoblastoma binding protein 4, like.	0.995
lin37	LOC101172332	ENSORLP00000040868	ENSORLP00000004335	Lin-37 DREAM MuvB core complex component.	Uncharacterized protein.	0.831