aktip protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

aktip

Akt interacting protein. (284 aa)

Predicted Functional Partners:

hook2

0.897

hook1

0.800

HOOK3

0.800

LOC101162166

0.768

LOC101175601

0.682

fam160a1

0.682

terf1

0.587

tnfsf13b

0.567

catip

0.512

thoc2

0.489

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HOOK3	LOC101162166	ENSORLP00000040660	ENSORLP00000035995	Hook microtubule tethering protein 3.	Family with sequence similarity 160 member A2.	0.508
HOOK3	LOC101175601	ENSORLP00000040660	ENSORLP00000003879	Hook microtubule tethering protein 3.	Uncharacterized protein.	0.508
HOOK3	aktip	ENSORLP00000040660	ENSORLP00000017242	Hook microtubule tethering protein 3.	Akt interacting protein.	0.800
HOOK3	fam160a1	ENSORLP00000040660	ENSORLP00000009665	Hook microtubule tethering protein 3.	Family with sequence similarity 160 member A1a.	0.508
HOOK3	hook2	ENSORLP00000040660	ENSORLP00000019519	Hook microtubule tethering protein 3.	Hook microtubule-tethering protein 2.	0.513
LOC101162166	HOOK3	ENSORLP00000035995	ENSORLP00000040660	Family with sequence similarity 160 member A2.	Hook microtubule tethering protein 3.	0.508
LOC101162166	aktip	ENSORLP00000035995	ENSORLP00000017242	Family with sequence similarity 160 member A2.	Akt interacting protein.	0.768
LOC101162166	hook1	ENSORLP00000035995	ENSORLP00000037944	Family with sequence similarity 160 member A2.	Hook microtubule-tethering protein 1.	0.508
LOC101162166	hook2	ENSORLP00000035995	ENSORLP00000019519	Family with sequence similarity 160 member A2.	Hook microtubule-tethering protein 2.	0.554
LOC101175601	HOOK3	ENSORLP00000003879	ENSORLP00000040660	Uncharacterized protein.	Hook microtubule tethering protein 3.	0.508
LOC101175601	aktip	ENSORLP00000003879	ENSORLP00000017242	Uncharacterized protein.	Akt interacting protein.	0.682
LOC101175601	hook1	ENSORLP00000003879	ENSORLP00000037944	Uncharacterized protein.	Hook microtubule-tethering protein 1.	0.508
LOC101175601	hook2	ENSORLP00000003879	ENSORLP00000019519	Uncharacterized protein.	Hook microtubule-tethering protein 2.	0.554
aktip	HOOK3	ENSORLP00000017242	ENSORLP00000040660	Akt interacting protein.	Hook microtubule tethering protein 3.	0.800
aktip	LOC101162166	ENSORLP00000017242	ENSORLP00000035995	Akt interacting protein.	Family with sequence similarity 160 member A2.	0.768
aktip	LOC101175601	ENSORLP00000017242	ENSORLP00000003879	Akt interacting protein.	Uncharacterized protein.	0.682
aktip	catip	ENSORLP00000017242	ENSORLP00000035665	Akt interacting protein.	Ciliogenesis associated TTC17 interacting protein.	0.512
aktip	fam160a1	ENSORLP00000017242	ENSORLP00000009665	Akt interacting protein.	Family with sequence similarity 160 member A1a.	0.682
aktip	hook1	ENSORLP00000017242	ENSORLP00000037944	Akt interacting protein.	Hook microtubule-tethering protein 1.	0.800
aktip	hook2	ENSORLP00000017242	ENSORLP00000019519	Akt interacting protein.	Hook microtubule-tethering protein 2.	0.897