STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsf4Heat shock transcription factor 4. (284 aa)    
Predicted Functional Partners:
LOC101169506
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
    
 0.787
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
    
 0.787
sirt1
Deacetylase sirtuin-type domain-containing protein.
   
 0.731
trap1
TNF receptor-associated protein 1.
    
 0.716
tsc1
TSC complex subunit 1b.
    
 0.716
ENSORLP00000031311
Uncharacterized protein.
    
 0.716
hsbp1
Heat shock factor binding protein 1a.
    
 0.700
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
    
 0.655
hsp70-5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
    
 0.651
hsp70-3
Uncharacterized protein; Belongs to the heat shock protein 70 family.
    
 0.651
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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