STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nploc4NPL4 homolog, ubiquitin recognition factor. (624 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
   
 0.999
ubxn7
UBX domain protein 7.
    
 0.999
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 0.997
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.994
ubc
Ubiquitin B.
   
 0.948
fancl
FA complementation group L.
    
 0.938
fancf
FA complementation group F.
    
 0.938
fancb
FA complementation group B.
    
 0.938
rps27a
Ribosomal protein S27a.
   
 0.938
fancg
Uncharacterized protein.
    
 0.937
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.