STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndrg3Ndrg family member 3a. (384 aa)    
Predicted Functional Partners:
trpc4ap
Transient receptor potential cation channel, subfamily C, member 4 associated protein a.
      
 0.823
phf20
PHD finger protein 20, a.
      
 0.815
edem2
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.623
kpna4
Importin subunit alpha; Belongs to the importin alpha family.
      
 0.585
LOC101170824
Uncharacterized protein.
      
 0.560
scarb1
Scavenger receptor class B, member 1; Belongs to the CD36 family.
   
  
 0.508
sfrp1
Uncharacterized protein.
      
 0.452
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.