STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpc4apTransient receptor potential cation channel, subfamily C, member 4 associated protein a. (775 aa)    
Predicted Functional Partners:
edem2
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
 
 
  
 0.911
phf20
PHD finger protein 20, a.
      
 0.835
ndrg3
Ndrg family member 3a.
      
 0.823
NDRG3
NDRG family member 3.
      
 0.823
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.820
dcaf4
WD repeat domain 21.
   
 
 0.794
dcaf6
Ddb1 and cul4 associated factor 6.
    
 0.794
dcaf5
Ddb1 and cul4 associated factor 5.
     
 0.788
cul4b
Cullin 4B; Belongs to the cullin family.
    
 0.747
LOC101154851
Cullin 4A; Belongs to the cullin family.
    
 0.747
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.