STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc103Dynein_attach_N domain-containing protein. (242 aa)    
Predicted Functional Partners:
lrrc6
Leucine rich repeat containing 6.
      
 0.829
dnai2
Dynein axonemal intermediate chain 2a.
   
 
 0.802
dnaaf3
Dynein, axonemal, assembly factor 3 like.
   
  
 0.801
zmynd10
Zinc finger, MYND-type containing 10.
      
 0.800
ccdc65
NYD-SP28 domain-containing protein.
   
 
 0.785
LOC101159735
Radial spoke head component 4A.
   
  
 0.763
ccdc40
Coiled-coil domain containing 40.
      
 0.760
rsph9
Radial spoke head 9 homolog.
   
  
 0.744
dnah5
Dynein, axonemal, heavy chain 5.
     
 0.733
ENSORLP00000036098
Dynein assembly factor 1, axonemal.
   
  
 0.728
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.