STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pitpnc1Uncharacterized protein. (119 aa)    
Predicted Functional Partners:
rin1
Si:ch211-168d1.3.
      
 0.589
cdca5
Cell division cycle associated 5.
   
  
 0.575
mad2l1
HORMA domain-containing protein.
   
  
 0.507
etv4
Ets variant 4.
      
 0.451
arhgap22
Rho GTPase activating protein 22.
      
 0.436
H2LYM4_ORYLA
Rho GTPase activating protein 22.
      
 0.436
OSBPL8
Oxysterol-binding protein; Belongs to the OSBP family.
    
 0.419
cnep1r1
CTD nuclear envelope phosphatase 1 regulatory subunit 1.
     
 0.417
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.