STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161673Apolipoprotein Eb. (265 aa)    
Predicted Functional Partners:
LOC101156458
Apolipoprotein Ba.
   
 0.941
LOC101162068
Uncharacterized protein.
   
 
 0.910
H2MBB3_ORYLA
Vitellogenin domain-containing protein.
   
 0.896
LOC101158990
Apolipoprotein Bb, tandem duplicate 2.
   
 0.896
LOC101169721
Apolipoprotein A-Ib.
  
 0.879
snca
Uncharacterized protein; Belongs to the synuclein family.
    
 0.851
LOC101161439
Uncharacterized protein.
  
0.843
LOC101161189
Uncharacterized protein.
  
0.840
LOC101172288
Amyloid beta (A4) precursor protein b.
    
 0.831
APP
Amyloid beta precursor protein.
    
 0.831
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.