STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgrmc1Progestin receptor membrane component 1; Belongs to the cytochrome b5 family. (181 aa)    
Predicted Functional Partners:
LOC100415783
Progestin and adipoQ receptor family member VII, b.
    
 
 0.810
H2N0C8_ORYLA
Cytochrome P450, family 51; Belongs to the cytochrome P450 family.
    
 
 0.713
LOC101155998
Cytochrome b5 type B; Belongs to the cytochrome b5 family.
   
  
 0.696
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 
 0.685
pgr
Uncharacterized protein.
      
 0.677
LOC101158486
Cytochrome b5 type A (microsomal); Belongs to the cytochrome b5 family.
   
  
 0.675
tmem97
Transmembrane protein 97; Intracellular orphan receptor that binds numerous drugs and which is highly expressed in various proliferating cells. Corresponds to the sigma-2 receptor, which is thought to play important role in regulating cell survival, morphology and differentiation. May play a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase. May alter the activity of some cytochrome P450 proteins.
      
 0.667
ATAD3A
ATPase family AAA domain containing 3A.
      
 0.658
paqr5
Progestin and adipoQ receptor family member Va.
    
 
 0.618
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
      
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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