STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcfc1Host cell factor C1a. (1691 aa)    
Predicted Functional Partners:
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 0.955
wdr5
WD repeat domain 5.
   
 0.909
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.886
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.882
mcrs1
Microspherule protein 1.
    
 0.832
wsb2
WD repeat and SOCS box containing 2.
   
 0.819
wsb1
WD repeat and SOCS box containing 1.
   
 0.819
LOC101165549
Si:dkey-13a21.4.
      
 0.813
rbbp5
Retinoblastoma binding protein 5.
    
 0.807
uchl5
Ubiquitin carboxyl-terminal hydrolase.
    
 0.793
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.