STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcbd1Pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha. (103 aa)    
Predicted Functional Partners:
qdpr
Quinoid dihydropteridine reductase a.
   
 
 0.986
tph2
Tryptophan hydroxylase 2.
  
 0.975
th2
BH4_AAA_HYDROXYL_2 domain-containing protein.
  
 0.975
pah
Phenylalanine hydroxylase.
  
 0.975
th
Tyrosine hydroxylase 1.
  
 0.975
tph1
Uncharacterized protein.
  
 0.975
PCBD2
Pterin-4 alpha-carbinolamine dehydratase 2.
  
  
 
0.902
iyd
Iodotyrosine deiodinase.
  
 
  0.843
hnf1a
HNF1 homeobox a.
    
 
 0.788
hgd
Homogentisate 1,2-dioxygenase.
  
  
 0.768
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.