STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smpxSmall muscle protein X-linked. (84 aa)    
Predicted Functional Partners:
csrp3
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
   
  
 0.713
POU3F4
POU domain protein.
   
  
 0.680
prps1
Phosphoribosyl pyrophosphate synthetase 1B.
      
 0.678
H2LZX2_ORYLA
Collagen, type IV, alpha 6.
   
  
 0.678
col4a5
Collagen, type IV, alpha 5 (Alport syndrome).
   
  
 0.678
aifm1
Apoptosis inducing factor mitochondrion associated 1.
      
 0.678
timm8a
Translocase of inner mitochondrial membrane 8 homolog A (yeast); Belongs to the small Tim family.
      
 0.678
LOC101164846
Zgc:92429.
   
  
 0.675
stil
SERPIN domain-containing protein; Belongs to the serpin family.
      
 0.558
LOC101170393
Myozenin 2b.
   
  
 0.540
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.