STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMD5Sterile alpha motif domain containing 5. (171 aa)    
Predicted Functional Partners:
sash1
SAM and SH3 domain containing 1a.
 
    
 0.729
ENSORLP00000036607
Uncharacterized protein.
 
    
 0.569
LOC101169820
Kelch repeat and BTB (POZ) domain containing 7.
      
 0.530
samd10
Sterile alpha motif domain containing 10b.
      
 0.491
SHC3
SHC adaptor protein 3.
    
 0.410
shc1
SHC (Src homology 2 domain containing) transforming protein 1.
    
 0.410
SHC4
SHC adaptor protein 4.
    
 0.410
shc2
SHC (Src homology 2 domain containing) transforming protein 2.
    
 0.410
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.