STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgi3Leucine-rich repeat LGI family, member 3. (548 aa)    
Predicted Functional Partners:
adam23
ADAM metallopeptidase domain 23.
     
 0.927
adam22
ADAM metallopeptidase domain 22.
     
 0.925
sorbs3
Sorbin and SH3 domain containing 3.
     
 0.668
chmp7
Charged multivesicular body protein 7.
      
 0.623
ADAM11
ADAM metallopeptidase domain 11.
     
 0.619
LOC101159950
Uncharacterized protein.
     
 0.604
LOC101171158
Tetraspanin.
   
 
 0.562
LOC101162567
Ninjurin 2.
   
  
 0.523
perp
P53 apoptosis effector related to pmp22.
      
 0.519
LOC101155717
Septin 7b; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
   
  
 0.513
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.