STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vcam1Vascular cell adhesion molecule 1b. (811 aa)    
Predicted Functional Partners:
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
   
 0.948
LOC101154978
Integrin beta; Belongs to the integrin beta chain family.
   
 
 0.937
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 
 0.937
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
    
 0.707
SELE
Selectin E.
   
 
 0.698
LOC101169209
Uncharacterized protein.
    
 
 0.593
LOC101172593
Tumor necrosis factor a (TNF superfamily, member 2).
   
 
 0.532
LOC101159746
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
      
 0.516
LOC101164921
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
      
 0.516
itga4
Integrin alpha 4; Belongs to the integrin alpha chain family.
   
 0.508
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.