STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab32RAB32a, member RAS oncogene family. (213 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
 
 0.748
steap2
STEAP family member 2, metalloreductase.
      
 0.667
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.610
LOC101158129
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.609
ankrd27
Ankyrin repeat domain 27 (VPS9 domain).
    
 
 0.609
kif13a
Kinesin family member 13A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.574
LOC110017181
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
      
 0.550
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
     
 0.520
hps1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
     
 0.514
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.511
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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