STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kctd9Potassium channel tetramerization domain containing 9a. (389 aa)    
Predicted Functional Partners:
rnf24
Ring finger protein 24.
      
 0.871
CLRN3
Clarin 3.
      
 0.862
ENSORLP00000034314
Ankyrin repeat domain 9.
      
 0.859
dock5
Dedicator of cytokinesis 5; Belongs to the DOCK family.
      
 0.805
ubox5
U-box domain containing 5.
      
 0.728
top2a
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.
   
 
 0.648
top2b
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.
   
 
 0.648
LOC101167799
Neuropeptide Y receptor Y8b; Belongs to the G-protein coupled receptor 1 family.
      
 0.570
smim20
Small integral membrane protein 20.
   
  
 0.553
mavs
CARD_2 domain-containing protein.
      
 0.544
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.