STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c6h11orf49Zgc:92873. (332 aa)    
Predicted Functional Partners:
tpgs2
Tubulin polyglutamylase complex subunit 2.
    
   0.708
ttll1
Tubulin tyrosine ligase-like family, member 1.
    
 
 0.670
nicn1
Nicolin 1.
    
   0.623
lrrc49
Uncharacterized protein.
    
 
 0.606
Lrrc49
Uncharacterized protein.
    
 
 0.606
c5h12orf10
Melanocyte proliferating gene 1.
      
 0.566
mfsd5
Major facilitator superfamily domain containing 5.
      
 0.530
pfdn5
Prefoldin 5.
      
 0.505
ttl
Tubulin tyrosine ligase.
    
 
 0.489
LOC101173948
Uncharacterized protein.
      
 0.487
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.