STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ckap5Cytoskeleton associated protein 5. (1640 aa)    
Predicted Functional Partners:
ndc80
NDC80 kinetochore complex component.
    
 
 0.975
Tacc3
TACC_C domain-containing protein.
    
 
 0.939
slain2
SLAIN motif family, member 2.
    
 
 0.933
nuf2
UF2 component of NDC80 kinetochore complex.
   
 
 0.925
LOC101163926
TACC_C domain-containing protein.
    
 
 0.916
mad2l1
HORMA domain-containing protein.
   
 0.902
mapre2
Microtubule-associated protein, RP/EB family, member 2.
   
 
 0.831
LOC101160378
Microtubule-associated protein, RP/EB family, member 3a.
   
 
 0.831
LOC101174390
Microtubule-associated protein, RP/EB family, member 3b.
   
 
 0.831
mapre1
Microtubule-associated protein, RP/EB family, member 1b.
   
 
 0.831
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.