STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168118MARVEL domain-containing protein. (293 aa)    
Predicted Functional Partners:
LOC101163826
Synapsin I.
   
 
 0.605
LOC101175011
Syntaxin 1A (brain); Belongs to the syntaxin family.
   
 0.592
LOC101161357
Uncharacterized protein.
   
 
 0.573
syn2
Uncharacterized protein.
   
 
 0.559
LOC101159835
RAB5A, member RAS oncogene family, a.
      
 0.537
LOC101174347
Synapsin IIa.
   
 
 0.518
LOC101169446
Glutamate receptor, metabotropic 8b.
      
 0.505
grm8
Glutamate receptor, metabotropic 8a.
      
 0.505
H2LWC6_ORYLA
Uncharacterized protein.
      
 0.503
tmem119
Transmembrane protein 119a.
      
 0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.