STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bckdkProtein-serine/threonine kinase. (494 aa)    
Predicted Functional Partners:
psmc2
Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.
 
    
 0.903
bckdha
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
   
 0.895
psmc5
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
 
    
 0.813
psmc6
Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family.
 
 
  
 0.809
pdhx
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
    
 0.780
dlat
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
    
 0.780
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
    
 0.777
psmc1
Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.
 
    
 0.737
psmc3
Proteasome 26S subunit ATPase 3; Belongs to the AAA ATPase family.
 
 
  
 0.718
pdhb
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.717
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.