STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175377Nuclear factor, interleukin 3 regulated, member 5. (589 aa)    
Predicted Functional Partners:
COX2
Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.
    
 0.658
bhlhe41
BHLH protein DEC2.
    
 0.637
H2M1Z4_ORYLA
Cytochrome c oxidase subunit 7C.
   
 0.611
LOC101170993
Uncharacterized protein.
   
 0.605
LOC101170179
Uncharacterized protein.
   
 0.605
PER2
Period circadian regulator 2.
   
 0.601
LOC101161338
Period circadian clock 2.
   
 0.601
LOC101168329
Cryptochrome DASH.
   
  
 0.594
LOC101172430
Neuronal PAS domain protein 2.
    
 0.590
LOC101173126
Dopamine receptor D4a; Belongs to the G-protein coupled receptor 1 family.
      
 0.566
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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