STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smdt1Single-pass membrane protein with aspartate-rich tail 1a. (94 aa)    
Predicted Functional Partners:
micu1
Mitochondrial calcium uptake 1.
    
 0.973
micu2
Mitochondrial calcium uptake 2.
    
 0.949
LOC101160267
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 0.912
Mcu
Mitochondrial calcium uniporter.
    
 0.912
mcub
MCU domain-containing protein.
    
 0.912
LOC101164731
Mitochondrial calcium uptake family, member 3b.
     
 0.834
micu3
Mitochondrial calcium uptake family, member 3a.
     
 0.834
LOC101167609
Solute carrier family 25 member 42; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.718
SLC25A42
Solute carrier family 25 member 42; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.718
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
     
 0.667
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.