STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174833Nucleolar protein 4-like a. (685 aa)    
Predicted Functional Partners:
commd7
COMM domain containing 7.
 
    
 0.621
LOC101175566
Cdk5 and Abl enzyme substrate 2a; Belongs to the cyclin family.
      
 0.610
LOC101170760
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.577
mapre1
Microtubule-associated protein, RP/EB family, member 1b.
      
 0.517
LOC101169856
DnaJ (Hsp40) homolog, subfamily C, member 5aa.
      
 0.511
ralgapb
Ral GTPase activating protein, beta subunit (non-catalytic).
   
 0.434
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.