STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc28Leucine rich repeat containing 28. (390 aa)    
Predicted Functional Partners:
lrrc20
Leucine rich repeat containing 20.
  
 
  0.569
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.567
prelp
Proline/arginine-rich end leucine-rich repeat protein.
  
 
 0.567
chad
Chondroadherin.
  
 
 0.559
LOC101159101
Si:dkey-32e6.6.
  
 
 0.556
H2MBJ4_ORYLA
Uncharacterized protein.
  
 
 0.556
kera
Keratocan.
  
 
 0.548
LOC101167033
Zgc:113307.
  
 
 0.545
LOC101169042
Leucine rich repeat transmembrane neuronal 4 like 2.
  
 
 0.537
LRRTM4
Leucine rich repeat transmembrane neuronal 4.
  
 
 0.525
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.