STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FEM1AFem-1 homolog A. (617 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 0.956
cul2
Cullin 2; Belongs to the cullin family.
    
 0.872
eloc
Elongin C paralog b; Belongs to the SKP1 family.
    
 0.749
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.713
ELOB
Ubiquitin-like domain-containing protein.
    
 0.671
ENSORLP00000041981
Uncharacterized protein.
    
 0.641
commd4
COMM domain containing 4.
    
  0.581
fnip1
Folliculin interacting protein 1.
    
 0.566
commd8
COMM domain containing 8.
   
  0.564
rnf7
Ring finger protein 7.
    
 0.553
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.