STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
poldip3Polymerase (DNA-directed), delta interacting protein 3. (480 aa)    
Predicted Functional Partners:
LOC101160447
RAN binding protein 2.
   
 0.968
nxf1
Zgc:153681.
   
 0.951
eif4a3
Eukaryotic translation initiation factor 4A3.
   
 0.943
sarnp
SAP domain containing ribonucleoprotein.
   
 0.925
LOC101167611
Mago homolog, exon junction complex subunit.
   
 0.919
LOC101163463
Uncharacterized protein.
   
 0.913
DDX39A
Uncharacterized protein.
   
 0.913
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.906
thoc2
THO complex 2.
   
 0.895
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.889
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.