STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165751Ubiquitin carboxyl-terminal hydrolase. (401 aa)    
Predicted Functional Partners:
ubc
Ubiquitin B.
   
 0.839
rnf41
Ring finger protein 41.
    
 0.817
rps27a
Ribosomal protein S27a.
    
 0.772
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate.
   
 0.722
stam2
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.
    
 0.715
stam
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
    
 0.715
LOC101164496
Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.
   
 
 0.688
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.686
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.654
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
   
 0.654
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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