STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175659ATPase family AAA domain containing 1a; Belongs to the AAA ATPase family. (378 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.948
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 0.780
pex19
Peroxisomal biogenesis factor 19.
    
 0.758
pex13
Peroxisomal biogenesis factor 13.
    
 0.744
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
    
 0.743
pex14
Peroxisomal biogenesis factor 14.
    
 0.727
rack1
Receptor for activated C kinase 1.
 
 
 
 0.725
chmp3
Charged multivesicular body protein 3.
   
 0.720
pex3
Peroxisomal biogenesis factor 3.
    
 0.718
ubxn1
UBX domain protein 1.
   
 0.717
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.