STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
golga3Golgin A3. (1512 aa)    
Predicted Functional Partners:
tmf1
TATA element modulatory factor 1.
   
 
 0.612
LOC101158472
VRK serine/threonine kinase 2.
    
 0.611
vrk1
VRK serine/threonine kinase 1; Belongs to the protein kinase superfamily.
    
 0.611
LOC101167061
Protein phosphatase 2, regulatory subunit A, beta b.
   
  0.602
LOC101155643
Rho family GTPase 2.
    
 0.595
LOC101158526
Rho family GTPase 2.
    
 0.595
gopc
Golgi-associated PDZ and coiled-coil motif containing.
   
 
 0.590
arl1
ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.
    
 0.581
tp53bp1
Tumor protein p53 binding protein, 1.
   
 0.579
cenpj
Centromere protein J.
    
 
 0.575
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.