STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100049292Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (859 aa)    
Predicted Functional Partners:
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.910
LOC101175150
Sema domain-containing protein.
    
 0.622
plxna3
Plexin A3.
    
 0.622
LOC101175236
Plexin A1a.
    
 0.622
LOC101175393
Macrophage stimulating 1 receptor a.
    
 0.612
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.612
mst1r
Macrophage stimulating 1 receptor b.
    
 0.612
tomm34
Translocase of outer mitochondrial membrane 34.
    
 
 0.591
ptpra
Receptor-type tyrosine-protein phosphatase alpha.
   
 0.585
lnx2
Ligand of numb-protein X 2a.
      
 0.583
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.