STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160075DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (624 aa)    
Predicted Functional Partners:
DDX5
DEAD-box helicase 5; Belongs to the DEAD box helicase family.
  
  
 
0.901
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.864
sf3b1
Splicing factor 3b, subunit 1.
   
 0.814
ebna1bp2
EBNA1 binding protein 2.
   
 0.802
dkc1
Dyskeratosis congenita 1, dyskerin.
  
 
 0.782
mtrex
Uncharacterized protein.
   
 0.765
nop58
NOP58 ribonucleoprotein homolog (yeast).
  
 
 0.758
wdr12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.744
LOC101166045
Guanine nucleotide binding protein-like 3 (nucleolar)-like.
  
 0.743
gnl3
Guanine nucleotide binding protein-like 3 (nucleolar).
  
 0.743
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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