STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cxcl12Chemokine (C-X-C motif) ligand 12b; Belongs to the intercrine alpha (chemokine CxC) family. (102 aa)    
Predicted Functional Partners:
ackr3
Chemokine (C-X-C motif) receptor 7; Belongs to the G-protein coupled receptor 1 family.
    
 0.997
LOC100049444
C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family.
   
 0.995
LOC101160103
Chemokine (C-X-C motif) receptor 4a; Belongs to the G-protein coupled receptor 1 family.
   
 0.983
cxcl14
Chemokine (C-X-C motif) ligand 14.
  
 
 0.946
LOC101162278
Chemokine (C-C motif) ligand 25b.
    
 0.931
a-sdf1a
Chemokine (C-X-C motif) ligand 12a; Belongs to the intercrine alpha (chemokine CxC) family.
  
  
0.903
LOC101155802
Chemokine (C-X-C motif) ligand 19.
    
 0.883
cxcr5
Chemokine (C-X-C motif) receptor 5; Belongs to the G-protein coupled receptor 1 family.
    
 0.882
LOC101162901
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.832
LOC101160820
SCY domain-containing protein.
   
 0.795
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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