STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172325Cytochrome P450, family 27, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family. (522 aa)    
Predicted Functional Partners:
LOC101164878
Cytochrome P450, family 2, subfamily R, polypeptide 1; Belongs to the cytochrome P450 family.
  
0.952
LOC101165632
Cytochrome P450, family 24, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
  
 
0.922
fdxr
NADPH:adrenodoxin oxidoreductase, mitochondrial.
     
 0.711
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.629
vdralpha
Uncharacterized protein.
    
 
 0.585
fdx2
Ferredoxin 2.
  
 0.581
fdx1
2Fe-2S ferredoxin-type domain-containing protein.
  
 0.581
LOC105357330
Cadherin 3.
      
 0.511
LOC101159648
Keratin 15; Belongs to the intermediate filament family.
    
 
 0.507
star
Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.
   
 
 0.490
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.