STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tango2Transport and golgi organization 2 homolog (Drosophila). (311 aa)    
Predicted Functional Partners:
mrpl40
Mitochondrial ribosomal protein L40.
      
 0.664
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
      
 0.558
LOC101166537
Cytochrome c oxidase assembly factor COX18.
      
 0.487
mcm3ap
Minichromosome maintenance complex component 3 associated protein.
      
 0.485
ube2w
UBIQUITIN_CONJUGAT_2 domain-containing protein.
      
 0.441
lin37
Lin-37 DREAM MuvB core complex component.
      
 0.431
txnrd2
Thioredoxin reductase 2, tandem duplicate 1.
    
 
 0.424
tomm22
Translocase of outer mitochondrial membrane 22 homolog (yeast).
      
 0.412
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.