STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcf3E2A2 transcription factor. (669 aa)    
Predicted Functional Partners:
H2MFW7_ORYLA
BHLH domain-containing protein.
   
 0.783
LOC101174459
T-cell acute lymphocytic leukemia 1.
   
 0.783
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.745
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.713
H2M9H6_ORYLA
Achaete-scute family bHLH transcription factor 1b.
   
 0.709
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.709
myog
Myogenin.
   
 0.697
LOC101161879
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.694
myf5
Myogenic factor.
   
 0.662
LOC105357454
Myogenic factor.
   
 0.662
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.