STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdcd4Programmed cell death 4b. (440 aa)    
Predicted Functional Partners:
eif4a2
Eukaryotic translation initiation factor 4A, isoform 2; Belongs to the DEAD box helicase family.
   
 0.693
LOC101155548
Eukaryotic translation initiation factor 4A1B; Belongs to the DEAD box helicase family.
   
 0.693
LOC101156600
Uncharacterized protein.
      
 0.504
LOC101166763
Aldo-keto reductase family 1, member B1 (aldose reductase), tandem duplicate 1.
      
 0.503
LOC101157022
Aldo-keto reductase family 1, member B1 (aldose reductase), tandem duplicate 1.
      
 0.503
LOC101167007
Aldo_ket_red domain-containing protein.
      
 0.503
LOC101157264
Aldo-keto reductase family 1, member B1 (aldose reductase), tandem duplicate 1.
      
 0.503
NPTX1
Uncharacterized protein.
      
 0.502
nsmaf
Neutral sphingomyelinase (N-SMase) activation associated factor.
      
 0.502
gsta4
Uncharacterized protein; Belongs to the GST superfamily.
      
 0.501
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.