STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcnDecorin; May affect the rate of fibrils formation. (367 aa)    
Predicted Functional Partners:
LOC101157631
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.978
LOC101155037
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.946
lum
Lumican.
  
  
0.941
LOC101155815
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.931
tgfb3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.931
fgf7
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
   
 0.742
col6a1
Collagen, type VI, alpha 1.
   
 0.735
hspg2
Heparan sulfate proteoglycan 2.
   
 
 0.725
cspg4
Chondroitin sulfate proteoglycan 4.
     
 0.704
LOC101173791
Si:dkey-193c22.2.
     
 0.704
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.