STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160642Uncharacterized protein. (163 aa)    
Predicted Functional Partners:
LOC101161860
Parvalbumin 7; Belongs to the parvalbumin family.
   
 
 0.684
gpx1
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
  
 
0.680
psma4
Proteasome subunit alpha type.
   
  
 0.680
TTPA
Alpha tocopherol transfer protein.
   
  
 0.679
trit1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.
      
 0.678
LOC101168864-2
Solute carrier family 25 member 22a; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.678
lpcat3
Lysophosphatidylcholine acyltransferase 3; Belongs to the membrane-bound acyltransferase family.
      
 0.678
LOC101155840
Ephrin RBD domain-containing protein; Belongs to the ephrin family.
      
 0.678
LOC100125499
3-hydroxy-3-methylglutaryl coenzyme A reductase.
      
 0.676
LOC101166888
3-hydroxy-3-methylglutaryl coenzyme A reductase.
      
 0.676
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.