STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmgxb4HMG box domain containing 4a. (577 aa)    
Predicted Functional Partners:
mcf2
MCF.2 cell line derived transforming sequence a.
      
 0.740
prdm12
PR domain zinc finger protein 12; Involved in the positive regulation of histone H3-K9 dimethylation; Belongs to the class V-like SAM-binding methyltransferase superfamily.
      
 0.611
rab10
RAB10, member RAS oncogene family.
      
 0.506
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.497
myl7
Uncharacterized protein.
      
 0.450
H2MT93_ORYLA
Cardiac myosin light chain-1.
      
 0.419
LOC101167740
Uncharacterized protein; Belongs to the tropomyosin family.
   
  
 0.409
gstk1
Serine/threonine/tyrosine kinase 1b.
      
 0.406
LOC101158789
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.405
cavin1
Caveolae associated protein 1a.
      
 0.405
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.