STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163162Myxovirus (influenza) resistance B; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (624 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
   
 0.987
LOC101162092
Ubiquitin specific peptidase 18; Belongs to the peptidase C19 family.
   
 0.778
rsad2
Radical S-adenosyl methionine domain containing 2.
   
  
 0.743
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
   
 0.713
H2M6E4_ORYLA
Uncharacterized protein.
    
 
 0.679
LOC101165932
Intersectin 2a.
    
 
 0.679
ENSORLP00000034742
Uncharacterized protein.
    
 
 0.679
ENSORLP00000036645
EH domain-containing protein.
    
 
 0.679
ENSORLP00000041578
SH3 domain-containing protein.
    
 
 0.679
prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 0.669
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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