STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163578Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (452 aa)    
Predicted Functional Partners:
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.979
gabarap
GABA(A) receptor-associated protein b.
   
 0.979
LOC101170049
Zgc:92606.
   
 0.975
LOC101168456
GABA(A) receptor-associated protein like 2.
   
 0.800
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.788
map1lc3b
RNA-dependent DNA polymerase.
   
 0.788
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
   
 0.764
LOC101159112
Microtubule-associated protein 1 light chain 3 gamma, like.
   
 0.764
ulk1
Unc-51 like autophagy activating kinase 1.
   
 
 0.653
LOC101167046
Unc-51 like autophagy activating kinase 1a.
   
 
 0.653
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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