STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171478Oxysterol-binding protein; Belongs to the OSBP family. (862 aa)    
Predicted Functional Partners:
LOC101175278
G protein-coupled receptor 89B.
 
      0.814
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 
 0.620
LOC101172303
Nucleosome assembly protein 1-like 4b; Belongs to the nucleosome assembly protein (NAP) family.
 
    
 0.538
slc22a18
Solute carrier family 22 member 18.
   
  
 0.537
gm2a
GM2 ganglioside activator.
      
 0.487
utp20
UTP20 small subunit processome component.
   
  
 0.484
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
      
 0.456
cars1
Cysteinyl-tRNA synthetase.
 
 
  
 0.455
arl15
ADP-ribosylation factor-like 15a.
   
 0.452
phlda2
Pleckstrin homology-like domain, family A, member 2.
      
 0.444
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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