STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myogMyogenin. (248 aa)    
Predicted Functional Partners:
mstn
TGF_BETA_2 domain-containing protein.
   
  
 0.748
mymk
Myomaker, myoblast fusion factor.
   
  
 0.731
mef2a
Myocyte enhancer factor 2aa.
    
 0.728
MEF2D
Myocyte enhancer factor 2D.
    
 0.716
LOC101174373
Myocyte enhancer factor 2d.
    
 0.716
pax7
Uncharacterized protein.
   
 
 0.707
tcf12
Transcription factor 12.
   
 0.697
TCF4
Transcription factor 4.
   
 0.697
tcf3
E2A2 transcription factor.
   
 0.697
LOC100820722
Transcription factor 3b.
   
 0.693
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.