STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chmp3Charged multivesicular body protein 3. (220 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
   
0.997
LOC101156446
Charged multivesicular body protein 4C.
   
 0.980
LOC101173541
Uncharacterized protein.
   
 0.980
chmp4b
Charged multivesicular body protein 4Bb.
   
 0.980
chmp1b
Chromatin modifying protein 1B.
 
 
 0.973
chmp1a
Charged multivesicular body protein 1A.
 
 
 0.972
LOC101168369
Charged multivesicular body protein 6a.
    
 0.961
chmp7
Charged multivesicular body protein 7.
   
 0.961
chmp6
Charged multivesicular body protein 6.
    
 0.961
chmp2b
Charged multivesicular body protein 2Bb.
   
0.957
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.